Odyssey - an easy to use genomic data pipeline
Odyssey is semi-autonomous workflow that aids in the preparation, phasing, and imputation of genomic data. Odyssey also provides support for custom reference panel merging, population structure (admixture) analysis, phenotype normalization, genetic data quality control, genome-wide-association studies (GWAS), and visualization of analysis results.
If you use Odyssey in any published work, please cite the following paper:
Eller, Ryan J., Sarath C. Janga, and Susan Walsh. "Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data." BMC bioinformatics 20.1 (2019): 364. https://doi.org/10.1186/s12859-019-2964-5